Universal Proteome Explorer

Version 2.0.   5 September 2008. Families: 56,856. Hidden Markov Models (family and subfamily): 1,450,997.

The PhyloFacts database contains pre-calculated structural and phylogenomic analyses of over 56,000 protein families and domains. [read more]

SEQUENCE SEARCH	Submit query sequence to find PhyloFacts family matches
DATABASE SEARCH	By taxonomy, GO annotation, accession, other descriptors
BROWSE LIBRARIES	Structure prediction, GPCRs, Plant disease and stress resistance, Ion channels, Innate immunity, Plasmodium falciparum

This work is funded by grant number R01 HG002769 from the National Human Genome Research Institute of the NIH and by a Presidential Early Career Award for Scientists and Engineers from the National Science Foundation.

Please cite the following paper in references to this resource: "PhyloFacts: An online structural phylogenomic encyclopedia for protein functional and structural classification," Nandini Krishnamurthy, Duncan Brown, Dan Kirshner and Kimmen Sjölander Genome Biology 2006, 7:R83.

Comments, questions? Email phylo@phylogenomics.berkeley.edu.