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FlowerPower is a protein homology clustering algorithm, similar to PSI-BLAST in its iterated approach to alignment, profile construction, and homolog identification, but with distinct differences. More information.

If you find FlowerPower helpful, please consider citing the following publication:
Nandini Krishnamurthy, Duncan Brown and Kimmen Sjölander, "FlowerPower: clustering proteins into domain architecture classes for phylogenomic inference of protein function", BMC Evolutionary Biology 2007, 7 Suppl 1:S12 doi:10.1186/1471-2148-7-S1-S12.

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